I address this in 2 ways. First, the water changes I do are on the smaller side (5-10g) and I do them more frequently to keep thing a bit more stable. This typically equates to less than 10% of total water volume per change. Second, I have the auto doser set up to dose Calcium & Alk just under what the daily consumption is for my tanks. I manually dose to make up for any shortfall when I do my weekly (at least) testing.
For example, when I test my frag tank on a Saturday, if it's anything less than 7.5 dKh, I'll manually dose some Reef Builder. This way I can keep the Alk at my desird level of 8.0 dKh. Sometimes I'll test mid-week but usually it's only on the weekend. If I do a water change during the week with Reef Crystals, it might increase my Alk to 8.3 or 8.5 and I'd end up with an Alk of 8.0 when I test it again on Saturday. If it is, I won't dose anything. I personally like testing and dosing, it's almost therapeutic. My goal with auto dosing is to even things out, especially when I'm gone during the week. There are always going to be minor swings and my goal is to keep them as minor as possible.