It is ok. It is just the air that occupies the unmeasured space inthe needle-like thingie. The readings are still consistent as long as you dont accidentally squirt air out (impossible unless you hold it upright)
Since the air is not forced to contract or expand in the syringe, the volume you vacuum into the syringe will be the same as the liquid drawn into the needle.
Maybe I worded that weird, but basically dont worry...it works