According to the article they have correlated the disease in these corals to a specific bacterium, which is found in human fecal matter, among other sources. They have not said that it definitively comes from humans. They are trying to establish that, as I understood it.
One thing we have to consider is the 'scale' factor. No matter what the source is, it has to be from a sizeable enough source to have that impact. (the ocean is a really, really big place)
So, one thing we do know is, that there are a LOT of humans!
Personally, my 'hunch' is that we are to blame. This would not be the first negative environmental impact observed from human activity, by a long shot.
We shall see...