The pond liner can work. The corners will be funky and hard to keep the creases from getting too big. The main issue will be heat, at one foot deep the black liner will absorb a lot of the light energy and release it back into the water. I also don't know how the stuff is rated for uv, which can deteriorate it.
Those premade fiberglass trough's look pretty appealing. Especially since they're gel coated.
They have UV resistant liners. With climate controlling that small space, i don't see heat as a major issue, My current tank has black under it with no issue.
I looked at the pre-made ones, but I think they would run over 300 a piece, definitely over what I want to spend on the tanks.